RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Hammerhead Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 146 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00714 Hammerhead ribozyme (type I), RF00163, X15619.1/121-168 Ham. Ribozyme Unknown Rfam Database RF00163 X15619.1/168-121 48 RFA_00715 Hammerhead ribozyme (type I), RF00163, X15620.1/19-62 Ham. Ribozyme Unknown Rfam Database RF00163 X15620.1/62-19 44 RFA_00716 Hammerhead ribozyme (type I), RF00163, X15621.1/101-144 Ham. Ribozyme Unknown Rfam Database RF00163 X15621.1/144-101 44 RFA_00717 Hammerhead ribozyme (type I), RF00163, X15621.1/76-34 Ham. Ribozyme Unknown Rfam Database RF00163 X15621.1/34-76 43 RFA_00718 Hammerhead ribozyme (type I), RF00163, X52041.1/178-64 Ham. Ribozyme Unknown Rfam Database RF00163 X52041.1/64-178 115 RFA_00719 Hammerhead ribozyme (type I), RF00163, X52044.1/179-64 Ham. Ribozyme Unknown Rfam Database RF00163 X52044.1/64-179 116 RFA_00720 Hammerhead ribozyme (type I), RF00163, Z69686.1/342-390 Ham. Ribozyme Unknown Rfam Database RF00163 Z69686.1/390-342 49 RFA_00721 Hammerhead ribozyme (type I), RF00163, Z69688.1/265-313 Ham. Ribozyme Unknown Rfam Database RF00163 Z69688.1/313-265 49 RFA_00722 Hammerhead ribozyme (type I), RF00163, Z69689.1/341-389 Ham. Ribozyme Unknown Rfam Database RF00163 Z69689.1/389-341 49 RFA_00723 Hammerhead ribozyme (type I), RF00163, Z69690.1/342-390 Ham. Ribozyme Unknown Rfam Database RF00163 Z69690.1/390-342 49

Analyse the 146 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 146 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 146 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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