RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Hammerhead Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 146 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01181 FULL-LENGTH HAMMERHEAD RIBOZYME WITH MN(II) BOUND Ham. Ribozyme Unknown RCSB Protein Data Bank 2OEU 63 RFA_00388 Hammerhead ribozyme (type III), RF00008, AF170499.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AF170499.1/3-56 54 RFA_00389 Hammerhead ribozyme (type III), RF00008, AF170503.1/280-333 Ham. Ribozyme Unknown Rfam Database RF00008 AF170503.1/333-280 54 RFA_00390 Hammerhead ribozyme (type III), RF00008, AF170504.1/284-337 Ham. Ribozyme Unknown Rfam Database RF00008 AF170504.1/337-284 54 RFA_00391 Hammerhead ribozyme (type III), RF00008, AF170509.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AF170509.1/3-56 54 RFA_00392 Hammerhead ribozyme (type III), RF00008, AF170520.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AF170520.1/335-282 54 RFA_00393 Hammerhead ribozyme (type III), RF00008, AF339739.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AF339739.1/3-56 54 RFA_00394 Hammerhead ribozyme (type III), RF00008, AF339740.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AF339740.1/3-56 54 RFA_00395 Hammerhead ribozyme (type III), RF00008, AJ005298.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005298.1/3-56 54 RFA_00396 Hammerhead ribozyme (type III), RF00008, AJ005299.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005299.1/335-282 54

Analyse the 146 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 146 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 146 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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