RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Other Ribosomal RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 64 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00906 MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE Other rRNA Unknown RCSB Protein Data Bank 1ZX7 116 PDB_00907 MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE Other rRNA Unknown RCSB Protein Data Bank 1ZZ5 58 PDB_00915 MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE Other rRNA Unknown RCSB Protein Data Bank 2A04 58 PDB_00961 CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SU Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2BH2 60 PDB_01055 CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING A SITE Other rRNA Unknown RCSB Protein Data Bank 2FQN 43 PDB_01062 CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE COMPLEXED WITH APRAMYCIN Other rRNA Unknown RCSB Protein Data Bank 2G5K 44 PDB_01067 NMR STRUCTURE OF STEM REGION OF HELIX-35 OF 23S E.COLI RIBOSOMAL RNA (RESIDUES 736-760) Other rRNA Unknown RCSB Protein Data Bank 2GBH 16 PDB_01076 STRUCTURE OF SIGNAL RECOGNITION PARTICLE RECEPTOR (SR) IN COMPLEX WITH SIGNAL RECOGNITION PARTICLE ( Other rRNA TRITICUM SP RCSB Protein Data Bank 2GO5 217 PDB_01099 NMR STRUCTURE AND MG2+ BINDING OF AN RNA SEGMENT THAT UNDERLIES THE L7/L12 STALK IN THE E.COLI 50S R Other rRNA Unknown RCSB Protein Data Bank 2HEM 24 PDB_01119 STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION. Other rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2HW8 36

Analyse the 64 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 64 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 64 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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