RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Ribonuclease P RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 470 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00131 RNase P RNA, volunteer ESH26-4 RNase P RNA Unknown RNase P Database volunteer ESH26-4 281 ASE_00132 RNase P RNA, volunteer ESH30-3 RNase P RNA Unknown RNase P Database volunteer ESH30-3 318 ASE_00133 RNase P RNA, volunteer ESH46a-1 RNase P RNA Unknown RNase P Database volunteer ESH46a-1 303 ASE_00134 RNase P RNA, volunteer ESH7-16 RNase P RNA Unknown RNase P Database volunteer ESH7-16 318 ASE_00135 RNase P RNA, volunteer ESH7-4 RNase P RNA Unknown RNase P Database volunteer ESH7-4 356 ASE_00136 RNase P RNA, volunteer ESH7-9 RNase P RNA Unknown RNase P Database volunteer ESH7-9 311 ASE_00137 RNase P RNA, Friedmanniella antarctica, strain DSM 11053 RNase P RNA Unknown RNase P Database Friedmanniella antarctica, strain DSM 11053 312 ASE_00138 RNase P RNA, Fusobacterium mortiferum, strain ATCC 25557 RNase P RNA Unknown RNase P Database Fusobacterium mortiferum, strain ATCC 25557 285 ASE_00139 RNase P RNA, Flavobacterium yabuuchiae, strain ATCC 49272 RNase P RNA Unknown RNase P Database Flavobacterium yabuuchiae, strain ATCC 49272 330 ASE_00140 RNase P RNA, Fischerella sp., strain UTEX 1829 RNase P RNA Unknown RNase P Database Fischerella sp., strain UTEX 1829 377

Analyse the 470 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 470 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 470 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia