RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Signal Recognition Particle RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 394 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00032 NMR STRUCTURE OF SRP RNA DOMAIN IV SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 1CQ5 43 PDB_00033 NMR STRUCTURE OF SRP RNA DOMAIN IV SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 1CQL 43 PDB_00036 29-MER FRAGMENT OF HUMAN SRP RNA HELIX 6 SRP RNA Unknown RCSB Protein Data Bank 1D4R 84 PDB_00137 NMR STRUCTURE OF A SRP19 BINDING DOMAIN IN HUMAN SRP RNA SRP RNA Unknown RCSB Protein Data Bank 1L1W 29 PDB_00237 NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 28SP 28 PDB_00238 NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 28SR 28 PDB_00487 HUMAN SRP19 IN COMPLEX WITH HELIX 6 OF HUMAN SRP RNA SRP RNA HOMO SAPIENS RCSB Protein Data Bank 1JID 29 PDB_00547 CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII SRP RNA METHANOCOCCUS JANNASCHII RCSB Protein Data Bank 1LNG 97 PDB_00879 CRYSTAL STRUCTURE OF 7S.S SRP RNA OF M. JANNASCHII SRP RNA M. JANNASCHII RCSB Protein Data Bank 1Z43 101 PDB_01041 SOLUTION STRUCTURE OF A GAAG TETRALOOP IN SRP RNA FROM PYROCOCCUS FURIOSUS SRP RNA Unknown RCSB Protein Data Bank 2F87 12

Analyse the 394 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 394 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 394 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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