RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Signal Recognition Particle RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 394 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00180 LYC.ES-D SRP RNA Unknown SRP Database LYC.ES-D 213 SRP_00181 LYC.ES-E SRP RNA Unknown SRP Database LYC.ES-E 304 SRP_00182 LYC.ES-F SRP RNA Unknown SRP Database LYC.ES-F 304 SRP_00183 LYC.ES-G SRP RNA Unknown SRP Database LYC.ES-G 304 SRP_00184 LYC.ES-H SRP RNA Unknown SRP Database LYC.ES-H 304 SRP_00185 LYC.ES-I SRP RNA Unknown SRP Database LYC.ES-I 302 SRP_00186 LYC.ES-J SRP RNA Unknown SRP Database LYC.ES-J 303 SRP_00187 LYC.ES-K SRP RNA Unknown SRP Database LYC.ES-K 303 SRP_00188 LYC.ES-L SRP RNA Unknown SRP Database LYC.ES-L 250 SRP_00189 LYC.ES-M SRP RNA Unknown SRP Database LYC.ES-M 274

Analyse the 394 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 394 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 394 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia