RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00144 CRYSTAL STRUCTURE OF THE HIGHLY CONSERVED RNA INTERNAL LOOP OF SRP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1LNT 24 PDB_00149 STRUCTURE OF WILD-TYPE AND MUTANT INTERNAL LOOPS FROM THE SL-1 DOMAIN OF THE HIV-1 PACKAGING SIGNAL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1M5L 38 PDB_00150 SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1M82 25 PDB_00151 CHIMERIC HAIRPIN WITH 2',5'-LINKED RNA LOOP AND RNA STEM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ME1 12 PDB_00153 STRUCTURE OF PROKARYOTIC SECIS MRNA HAIRPIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MFK 23 PDB_00154 SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MFY 31 PDB_00156 STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI- PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MIS 16 PDB_00161 SHEARED A(ANTI)-A(ANTI) BASE PAIRS IN A DESTABILIZING 2X2 INTERNAL LOOP: THE NMR STRUCTURE OF 5'(RGG Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MUV 18 PDB_00162 THE TANDEM, SHEARED PA PAIRS IN 5'(RGGCPAGCCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MV1 18 PDB_00163 THE TANDEM, FACE-TO-FACE AP PAIRS IN 5'(RGGCAPGCCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MV2 18

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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