RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00190 SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING STEM- LOOP RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1PJY 22 PDB_00191 SOLUTION STRUCTURE OF THE DYSKERATOSIS CONGENITA MUTANT P2B HAIRPIN FROM HUMAN TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Q75 15 PDB_00195 CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QBP 84 PDB_00196 CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QC0 57 PDB_00197 NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QC8 25 PDB_00198 TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QES 16 PDB_00199 TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QET 16 PDB_00201 NMR STRUCUTRE OF 5'-R(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : AN RNA HAIRPIN CONTAINING THE IN VITRO SELECT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QWB 26 PDB_00207 CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RNA 28 PDB_00208 SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RNG 12

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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