RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00286 SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1A34 20 PDB_00289 SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES Synthetic RNA BACTERIOPHAGE P22 RCSB Protein Data Bank 1A4T 15 PDB_00299 HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1AKX 30 PDB_00301 AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1AM0 16 PDB_00306 ARG-BOUND TAR RNA, NMR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ARJ 29 PDB_00317 BOVINE IMMUNODEFICIENCY VIRUS TAT-TAR COMPLEX, NMR, 5 STRUCTURES Synthetic RNA BOVINE IMMUNODEFICIENCY VIRUS RCSB Protein Data Bank 1BIV 28 PDB_00337 SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1D0U 21 PDB_00340 MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1DDY 140 PDB_00342 CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1DI2 40 PDB_00349 THE NMR STRUCTURE OF THE 38KDA U1A PROTEIN-PIE RNA COMPLEX REVEALS THE BASIS OF COOPERATIVITY IN REG Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1DZ5 44

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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