RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer Messenger RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00127 Clos.botu._TRW-36826_1-355 tmRNA Unknown tmRNA Database Clos.botu._TRW-36826_1-355 355 TMR_00128 Clos.diff._AM180355_1-350 tmRNA Unknown tmRNA Database Clos.diff._AM180355_1-350 350 TMR_00129 Clos.diff._TRW-367459_1-350 tmRNA Unknown tmRNA Database Clos.diff._TRW-367459_1-350 350 TMR_00130 Clos.perf._AP003190_1-358 tmRNA Unknown tmRNA Database Clos.perf._AP003190_1-358 358 TMR_00131 Clos.perf._CP000246_1-361 tmRNA Unknown tmRNA Database Clos.perf._CP000246_1-361 361 TMR_00132 Clos.perf._CP000312_1-361 tmRNA Unknown tmRNA Database Clos.perf._CP000312_1-361 361 TMR_00133 Clos.perf._TRW-1502_1-361 tmRNA Unknown tmRNA Database Clos.perf._TRW-1502_1-361 361 TMR_00134 Clos.perf._TRW-195102_1-361 tmRNA Unknown tmRNA Database Clos.perf._TRW-195102_1-361 361 TMR_00135 Clos.teta._AE015927_1-355 tmRNA Unknown tmRNA Database Clos.teta._AE015927_1-355 355 TMR_00136 Clos.ther._TRW-203119_1-387 tmRNA Unknown tmRNA Database Clos.ther._TRW-203119_1-387 387

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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