RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer Messenger RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00207 Erwi.amyl._TRW-552_1-381 tmRNA Unknown tmRNA Database Erwi.amyl._TRW-552_1-381 381 TMR_00208 Erwi.caro._BX950851_1-363 tmRNA Unknown tmRNA Database Erwi.caro._BX950851_1-363 363 TMR_00209 Erwi.chry._TRW-198628_1-381 tmRNA Unknown tmRNA Database Erwi.chry._TRW-198628_1-381 381 TMR_00210 Eryt.lito._CP000157_1-304 tmRNA Unknown tmRNA Database Eryt.lito._CP000157_1-304 304 TMR_00211 Esch.coli._AE005491_1-363 tmRNA Unknown tmRNA Database Esch.coli._AE005491_1-363 363 TMR_00212 Esch.coli._AE014075_1-363 tmRNA Unknown tmRNA Database Esch.coli._AE014075_1-363 363 TMR_00213 Esch.coli._AP009048_1-363 tmRNA Unknown tmRNA Database Esch.coli._AP009048_1-363 363 TMR_00214 Esch.coli._BA000007_1-363 tmRNA Unknown tmRNA Database Esch.coli._BA000007_1-363 363 TMR_00215 Esch.coli._CP000243_1-363 tmRNA Unknown tmRNA Database Esch.coli._CP000243_1-363 363 TMR_00216 Esch.coli._CP000247_1-363 tmRNA Unknown tmRNA Database Esch.coli._CP000247_1-363 363

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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