RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 707 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00594 CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND GLUT tRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1N78 152 PDB_00625 E. COLI ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC KIRROMYCIN, A GTP ANALOG, AND PHE-TRNA tRNA ESCHERICHIA COLI RCSB Protein Data Bank 1OB2 78 PDB_00637 CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TRANSFER-MESSENGER RNA IN COMPLEX WITH SMPB tRNA AQUIFEX AEOLICUS RCSB Protein Data Bank 1P6V 69 PDB_00648 CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERM tRNA ZYMOMONAS MOBILIS RCSB Protein Data Bank 1Q2R 42 PDB_00649 CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERM tRNA ZYMOMONAS MOBILIS RCSB Protein Data Bank 1Q2S 39 PDB_00681 CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION T tRNA THERMOTOGA MARITIMA RCSB Protein Data Bank 1R3E 51 PDB_00722 MECHANISM OF CCA-ADDING ENZYMES SPECIFICITY REVEALED BY CRYSTAL STRUCTURES OF TERNARY COMPLEXES tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 1SZ1 152 PDB_00732 HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 1TFW 78 PDB_00733 HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 1TFY 77 PDB_00767 CRYSTAL STRUCTURE OF TRNA NUCLEOTIDYLTRANSFERASE COMPLEXED WITH A PRIMER TRNA AND AN INCOMING ATP AN tRNA AQUIFEX AEOLICUS RCSB Protein Data Bank 1VFG 67

Analyse the 707 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 707 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 707 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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