RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Rfam Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 313 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00428 Hammerhead ribozyme (type III), RF00008, AJ536614.1/206-152 Ham. Ribozyme Unknown Rfam Database RF00008 AJ536614.1/152-206 55 RFA_00429 Hammerhead ribozyme (type III), RF00008, AJ536617.1/1-40 Ham. Ribozyme Unknown Rfam Database RF00008 AJ536617.1/40-1 40 RFA_00430 Hammerhead ribozyme (type III), RF00008, AJ536619.1/206-152 Ham. Ribozyme Unknown Rfam Database RF00008 AJ536619.1/152-206 55 RFA_00431 Hammerhead ribozyme (type III), RF00008, AJ536620.1/1-40 Ham. Ribozyme Unknown Rfam Database RF00008 AJ536620.1/40-1 40 RFA_00432 Hammerhead ribozyme (type III), RF00008, AJ536620.1/206-152 Ham. Ribozyme Unknown Rfam Database RF00008 AJ536620.1/152-206 55 RFA_00433 Hammerhead ribozyme (type III), RF00008, AJ550898.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550898.1/335-282 54 RFA_00434 Hammerhead ribozyme (type III), RF00008, AJ550899.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550899.1/3-56 54 RFA_00435 Hammerhead ribozyme (type III), RF00008, AJ550900.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550900.1/3-56 54 RFA_00436 Hammerhead ribozyme (type III), RF00008, AJ550906.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550906.1/3-56 54 RFA_00437 Hammerhead ribozyme (type III), RF00008, AJ550907.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550907.1/3-56 54

Analyse the 313 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 313 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 313 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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