RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Rfam Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 313 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00448 Hammerhead ribozyme (type III), RF00008, M83545.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 M83545.1/3-56 54 RFA_00449 Hammerhead ribozyme (type III), RF00008, Y12833.1/339-285 Ham. Ribozyme Unknown Rfam Database RF00008 Y12833.1/285-339 55 RFA_00450 Hammerhead ribozyme (type III), RF00008, Y14700.1/133-53 Ham. Ribozyme Unknown Rfam Database RF00008 Y14700.1/53-133 81 RFA_00582 Y RNA, RF00019, K01562.1/1-110 Y RNA Unknown Rfam Database RF00019 K01562.1/110-1 110 RFA_00583 Y RNA, RF00019, K01563.1/1-100 Y RNA Unknown Rfam Database RF00019 K01563.1/100-1 100 RFA_00584 Y RNA, RF00019, K01564.1/1-77 Y RNA Unknown Rfam Database RF00019 K01564.1/77-1 77 RFA_00585 Y RNA, RF00019, L15431.1/36-134 Y RNA Unknown Rfam Database RF00019 L15431.1/134-36 99 RFA_00586 Y RNA, RF00019, L15432.1/36-124 Y RNA Unknown Rfam Database RF00019 L15432.1/124-36 89 RFA_00587 Y RNA, RF00019, L27530.1/1-99 Y RNA Unknown Rfam Database RF00019 L27530.1/99-1 99 RFA_00588 Y RNA, RF00019, L27537.1/1-96 Y RNA Unknown Rfam Database RF00019 L27537.1/96-1 96

Analyse the 313 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 313 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 313 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia