RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Sprinzl tRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 622 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00151 Sprinzl tRNA RI0501 tRNA Unknown Sprinzl tRNA Database RI0501 78 SPR_00152 Sprinzl tRNA RI1140 tRNA Unknown Sprinzl tRNA Database RI1140 77 SPR_00153 Sprinzl tRNA RI1141 tRNA Unknown Sprinzl tRNA Database RI1141 77 SPR_00154 Sprinzl tRNA RI1180 tRNA Unknown Sprinzl tRNA Database RI1180 77 SPR_00155 Sprinzl tRNA RI1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RI1540 77 SPR_00156 Sprinzl tRNA RI1580 tRNA Unknown Sprinzl tRNA Database RI1580 77 SPR_00157 Sprinzl tRNA RI1660 tRNA Unknown Sprinzl tRNA Database RI1660 77 SPR_00158 Sprinzl tRNA RI1661 tRNA Unknown Sprinzl tRNA Database RI1661 77 SPR_00159 Sprinzl tRNA RI1662 tRNA Unknown Sprinzl tRNA Database RI1662 76 SPR_00160 Sprinzl tRNA RI2720 tRNA Unknown Sprinzl tRNA Database RI2720 75

Analyse the 622 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 622 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 622 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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