RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00114
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00114
Molecule name [?]:RNase P RNA, Erysipelothrix rhusiopathiae
Source [?]:RNase P Database
Source ID [?]:Erysipelothrix rhusiopathiae
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:302
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:148
Number of paired bases [?]:154

Click on any header below for additional features.

Stem features

Number of stems [?]:18
Number of base pairs in stems [?]:77
Maximum length of a stem [?]:8
Average length of a stem [?]:4.28
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-5.11
Minimum estimated free energy [?]:-15.4

Hairpin loop features

Number of hairpin loops [?]:8
Maximum number of free bases in hairpin loops [?]:16
Average number of free bases in hairpin loops [?]:7.25
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:3
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:0.67
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:6.17
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:3
Average internal loop absolute asymmetry:1.67
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:4
Maximum number of free bases in multi-loops:26
Average number of free bases in multi-loops:2.8
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:26
Average multi-loop absolute asymmetry:4.25
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:8.67
Average multi-loop relative asymmetry:0.67
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:5
Average number of branches in multi-loops:3.75
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 13
Total number of AC non-canonical base pairs:3
Total number of AG non-canonical base pairs:5
Total number of CC non-canonical base pairs:2
Total number of CU non-canonical base pairs:2
Total number of GG non-canonical base pairs:1

Pseudoknot features



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