RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00148
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00148
Molecule name [?]:RNase P RNA, Halococcus morrhuae, strain LD.3.1
Source [?]:RNase P Database
Source ID [?]:Halococcus morrhuae, strain LD.3.1
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:475
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:167
Number of paired bases [?]:308

Click on any header below for additional features.

Stem features

Number of stems [?]:23
Number of base pairs in stems [?]:121
Maximum length of a stem [?]:11
Average length of a stem [?]:5.26
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-10.59
Minimum estimated free energy [?]:-22.8

Hairpin loop features

Number of hairpin loops [?]:8
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:3.25
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:4
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:0.62
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:8
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:4.56
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:1.13
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:2
Average internal loop relative asymmetry:1.13
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:1.09
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:1.11
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:0.78
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.67
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 7
Total number of AA non-canonical base pairs:1
Total number of AG non-canonical base pairs:4
Total number of CC non-canonical base pairs:1
Total number of GG non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:2
Number of bands:5
Number of base pairs in bands:33
Maximum band length:9
Average band length:6.6
Minimum band length:4
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:2.5
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:2
Average number of un-bands:2
Minimum number of un-bands:2
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:30
Average number of unpaired bases:23.5
Minimum number of unpaired bases:17
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:12
Maximum number of base pairs to remove, per pseudoknot:6
Average number of base pairs to remove, per pseudoknot:6
Minimum number of base pairs to remove, per pseudoknot:6
Minimum number of bands to remove, per molecule:2
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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