RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00160 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00160 Molecule name [?]: RNase P RNA, Kluyveromyces thermotolerans, strain NRRL Y-2233 Source [?]: RNase P Database Source ID [?]: Kluyveromyces thermotolerans, strain NRRL Y-2233 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 219 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 119 Number of paired bases [?]: 100

Click on any header below for additional features.

Stem features Number of stems [?]: 10 Number of base pairs in stems [?]: 50 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -8.5 Minimum estimated free energy [?]: -16

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 4.2 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 15 Average number of free bases in internal loops: 13 Minimum number of free bases in internal loop: 11 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 4 Minimum internal loop absolute asymmetry: 4 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 26 Average number of free bases in multi-loops: 8.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 26 Average multi-loop absolute asymmetry: 13.67 Minimum multi-loop absolute asymmetry: 2 Maximum multi-loop relative asymmetry: 13 Average multi-loop relative asymmetry: 2.33 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AG non-canonical base pairs: 1 Total number of CC non-canonical base pairs: 1 Total number of GG non-canonical base pairs: 1

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia