RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00167
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Format:
Molecule ID [?]:ASE_00167
Molecule name [?]:RNase P RNA, Lachesis muta
Source [?]:RNase P Database
Source ID [?]:Lachesis muta
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:331
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:205
Number of paired bases [?]:126

Click on any header below for additional features.

Stem features

Number of stems [?]:10
Number of base pairs in stems [?]:51
Maximum length of a stem [?]:8
Average length of a stem [?]:5.1
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:0.3
Average estimated free energy [?]:-7.66
Minimum estimated free energy [?]:-13.9

Hairpin loop features

Number of hairpin loops [?]:5
Maximum number of free bases in hairpin loops [?]:88
Average number of free bases in hairpin loops [?]:21.8
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:11
Average number of free bases in internal loops:7.17
Minimum number of free bases in internal loop:3
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:2.33
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:7
Average number of free bases in multi-loops:2
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:7
Average multi-loop absolute asymmetry:3.67
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:7
Average multi-loop relative asymmetry:1.19
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 6
Total number of AG non-canonical base pairs:5
Total number of CU non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:12
Maximum band length:8
Average band length:6
Minimum band length:4
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:3
Average number of un-bands:3
Minimum number of un-bands:3
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:40
Average number of unpaired bases:40
Minimum number of unpaired bases:40
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:4
Maximum number of base pairs to remove, per pseudoknot:4
Average number of base pairs to remove, per pseudoknot:4
Minimum number of base pairs to remove, per pseudoknot:4
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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