RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00194
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Format:
Molecule ID [?]:ASE_00194
Molecule name [?]:RNase P RNA, Mycoplasma genitalium, strain G-37
Source [?]:RNase P Database
Source ID [?]:Mycoplasma genitalium, strain G-37
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:384
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:146
Number of paired bases [?]:238

Click on any header below for additional features.

Stem features

Number of stems [?]:14
Number of base pairs in stems [?]:76
Maximum length of a stem [?]:14
Average length of a stem [?]:5.43
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.1
Average estimated free energy [?]:-7.59
Minimum estimated free energy [?]:-20.1

Hairpin loop features

Number of hairpin loops [?]:9
Maximum number of free bases in hairpin loops [?]:18
Average number of free bases in hairpin loops [?]:7.33
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:11
Average number of free bases in internal loops:5.33
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:2
Average internal loop absolute asymmetry:1.33
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:3
Average number of free bases in multi-loops:1
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:3
Average multi-loop absolute asymmetry:2
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:0
Average multi-loop relative asymmetry:0
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AG non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:5
Number of base pairs in bands:43
Maximum band length:15
Average band length:8.6
Minimum band length:6
Maximum number of bands per pseudoknot:5
Average number of bands per pseudoknot:5
Minimum number of bands per pseudoknot:5
Maximum number of un-bands:4
Average number of un-bands:4
Minimum number of un-bands:4
Maximum number of in-bands:3
Average number of in-bands:3
Minimum number of in-bands:3
Maximum number of unpaired bases:43
Average number of unpaired bases:43
Minimum number of unpaired bases:43
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:13
Maximum number of base pairs to remove, per pseudoknot:13
Average number of base pairs to remove, per pseudoknot:13
Minimum number of base pairs to remove, per pseudoknot:13
Minimum number of bands to remove, per molecule:2
Maximum number of bands to remove, per pseudoknot:2
Average number of bands to remove, per pseudoknot:2
Minimum number of bands to remove, per pseudoknot:2



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