RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00245
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00245
Molecule name [?]:RNase P RNA, Pichia canadensis, strain NRRL Y-2340
Source [?]:RNase P Database
Source ID [?]:Pichia canadensis, strain NRRL Y-2340
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:333
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:177
Number of paired bases [?]:156

Click on any header below for additional features.

Stem features

Number of stems [?]:12
Number of base pairs in stems [?]:78
Maximum length of a stem [?]:14
Average length of a stem [?]:6.5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-4.5
Average estimated free energy [?]:-10.89
Minimum estimated free energy [?]:-19.7

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:4.33
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:9
Minimum number of free bases in internal loop:6
Maximum internal loop absolute asymmetry:6
Average internal loop absolute asymmetry:4
Minimum internal loop absolute asymmetry:2
Maximum internal loop relative asymmetry:2
Average internal loop relative asymmetry:1.5
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:54
Average number of free bases in multi-loops:12.38
Minimum number of free bases in multi-loop:1
Maximum multi-loop absolute asymmetry:53
Average multi-loop absolute asymmetry:18.59
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:54
Average multi-loop relative asymmetry:5.95
Minimum multi-loop relative asymmetry:0.02
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 7
Total number of AA non-canonical base pairs:2
Total number of AG non-canonical base pairs:1
Total number of CU non-canonical base pairs:1
Total number of UU non-canonical base pairs:3

Pseudoknot features



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