RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule ASE_00289
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00289
Molecule name [?]:RNase P RNA, Pseudanabaena sp., strain PCC 6903
Source [?]:RNase P Database
Source ID [?]:Pseudanabaena sp., strain PCC 6903
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:450
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:136
Number of paired bases [?]:314

Click on any header below for additional features.

Stem features

Number of stems [?]:22
Number of base pairs in stems [?]:115
Maximum length of a stem [?]:14
Average length of a stem [?]:5.23
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-7.55
Minimum estimated free energy [?]:-21.6

Hairpin loop features

Number of hairpin loops [?]:9
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.44
Minimum number of free bases in hairpin loop [?]:4
Total number of UUCG hairpin motifs per molecule [?]:1

Bulge loop features
Number of bulge loops [?]:10
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:0.7
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:2
Average number of free bases in internal loops:2
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:11
Average number of free bases in multi-loops:2.38
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:11
Average multi-loop absolute asymmetry:3.25
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:11
Average multi-loop relative asymmetry:1.13
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 3
Total number of AA non-canonical base pairs:1
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:2
Number of bands:5
Number of base pairs in bands:42
Maximum band length:15
Average band length:8.4
Minimum band length:5
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:2.5
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:4
Average number of un-bands:2.5
Minimum number of un-bands:1
Maximum number of in-bands:1
Average number of in-bands:0.5
Minimum number of in-bands:0
Maximum number of unpaired bases:30
Average number of unpaired bases:27
Minimum number of unpaired bases:24
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:14
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:2
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia