RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule ASE_00293
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00293
Molecule name [?]:RNase P RNA, Rattus norvegicus
Source [?]:RNase P Database
Source ID [?]:Rattus norvegicus
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:257
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:169
Number of paired bases [?]:88

Click on any header below for additional features.

Stem features

Number of stems [?]:10
Number of base pairs in stems [?]:44
Maximum length of a stem [?]:8
Average length of a stem [?]:4.4
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-7.74
Minimum estimated free energy [?]:-14.7

Hairpin loop features

Number of hairpin loops [?]:5
Maximum number of free bases in hairpin loops [?]:63
Average number of free bases in hairpin loops [?]:16.2
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:11
Average number of free bases in internal loops:7.75
Minimum number of free bases in internal loop:5
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:3.5
Minimum internal loop absolute asymmetry:3
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:24
Average number of free bases in multi-loops:6
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:19
Average multi-loop absolute asymmetry:7.84
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:4.8
Average multi-loop relative asymmetry:0.9
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.5
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 3
Total number of AG non-canonical base pairs:1
Total number of CU non-canonical base pairs:1
Total number of GG non-canonical base pairs:1

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia