RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00303 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00303 Molecule name [?]: RNase P RNA, Saccharomyces bayanus Source [?]: RNase P Database Source ID [?]: Saccharomyces bayanus Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 369 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: ASE_00351 Number of domains [?]: 1 Number of unpaired bases [?]: 179 Number of paired bases [?]: 190

Click on any header below for additional features.

Stem features Number of stems [?]: 17 Number of base pairs in stems [?]: 95 Maximum length of a stem [?]: 13 Average length of a stem [?]: 5.59 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -3 Average estimated free energy [?]: -9.35 Minimum estimated free energy [?]: -22.9

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 4.33 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 6 Average number of free bases in bulge loops [?]: 1.75 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 4 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 5.75 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 1.5 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 17 Average number of free bases in multi-loops: 8.18 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 17 Average multi-loop absolute asymmetry: 7.94 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 8.5 Average multi-loop relative asymmetry: 1.38 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 3.67 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia