RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00314
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00314
Molecule name [?]:RNase P RNA, Saccharomyces cerevisiae
Source [?]:RNase P Database
Source ID [?]:Saccharomyces cerevisiae
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:Saccharomyces cerevisiae
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:369
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:175
Number of paired bases [?]:194

Click on any header below for additional features.

Stem features

Number of stems [?]:12
Number of base pairs in stems [?]:82
Maximum length of a stem [?]:13
Average length of a stem [?]:6.83
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-3.5
Average estimated free energy [?]:-10.87
Minimum estimated free energy [?]:-22.9

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:4.33
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:7.17
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:1.67
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:38
Average number of free bases in multi-loops:14.25
Minimum number of free bases in multi-loop:3
Maximum multi-loop absolute asymmetry:35
Average multi-loop absolute asymmetry:18.17
Minimum multi-loop absolute asymmetry:3
Maximum multi-loop relative asymmetry:12.67
Average multi-loop relative asymmetry:2.64
Minimum multi-loop relative asymmetry:0.08
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 5
Total number of AC non-canonical base pairs:2
Total number of AG non-canonical base pairs:1
Total number of CU non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:15
Maximum band length:8
Average band length:7.5
Minimum band length:7
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:4
Average number of un-bands:4
Minimum number of un-bands:4
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:44
Average number of unpaired bases:44
Minimum number of unpaired bases:44
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:7
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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