RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00329
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00329
Molecule name [?]:RNase P RNA, Schizosaccharomyces japonicus
Source [?]:RNase P Database
Source ID [?]:Schizosaccharomyces japonicus
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:286
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: ASE_00333, ASE_00352
Number of domains [?]:1
Number of unpaired bases [?]:160
Number of paired bases [?]:126

Click on any header below for additional features.

Stem features

Number of stems [?]:11
Number of base pairs in stems [?]:63
Maximum length of a stem [?]:13
Average length of a stem [?]:5.73
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-0.9
Average estimated free energy [?]:-9.06
Minimum estimated free energy [?]:-21.1

Hairpin loop features

Number of hairpin loops [?]:4
Maximum number of free bases in hairpin loops [?]:8
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:10
Minimum number of free bases in internal loop:8
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:2
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:22
Average number of free bases in multi-loops:8.44
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:20
Average multi-loop absolute asymmetry:11.11
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:11
Average multi-loop relative asymmetry:2.8
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AA non-canonical base pairs:1
Total number of CU non-canonical base pairs:1

Pseudoknot features



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