RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00337
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Format:
Molecule ID [?]:ASE_00337
Molecule name [?]:RNase P RNA, Schizosaccharomyces octosporus
Source [?]:RNase P Database
Source ID [?]:Schizosaccharomyces octosporus
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:281
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:139
Number of paired bases [?]:142

Click on any header below for additional features.

Stem features

Number of stems [?]:10
Number of base pairs in stems [?]:56
Maximum length of a stem [?]:13
Average length of a stem [?]:5.6
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:0.3
Average estimated free energy [?]:-7.2
Minimum estimated free energy [?]:-15.8

Hairpin loop features

Number of hairpin loops [?]:5
Maximum number of free bases in hairpin loops [?]:14
Average number of free bases in hairpin loops [?]:7.2
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:7.33
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:1.33
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:2.67
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:1.18
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 9
Total number of AC non-canonical base pairs:4
Total number of AG non-canonical base pairs:1
Total number of CC non-canonical base pairs:1
Total number of CU non-canonical base pairs:1
Total number of GG non-canonical base pairs:2

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:15
Maximum band length:8
Average band length:7.5
Minimum band length:7
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:3
Average number of un-bands:3
Minimum number of un-bands:3
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:34
Average number of unpaired bases:34
Minimum number of unpaired bases:34
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:7
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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