RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule CRW_00002
(click to expand/contract all tables)

Format:
Molecule ID [?]:CRW_00002
Molecule name [?]:a.I2.m.S.cerevisiae.B.OX1.i5
Source [?]:Gutell Lab CRW Site
Source ID [?]:a.I2.m.S.cerevisiae.B.OX1.i5
Reference [?]:http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.]
Type [?]:Group II Intron

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:Saccharomyces cerevisiae
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:905
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:3
Number of unpaired bases [?]:377
Number of paired bases [?]:528

Click on any header below for additional features.

Stem features

Number of stems [?]:26
Number of base pairs in stems [?]:148
Maximum length of a stem [?]:16
Average length of a stem [?]:5.69
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-7.15
Minimum estimated free energy [?]:-16.5

Hairpin loop features

Number of hairpin loops [?]:14
Maximum number of free bases in hairpin loops [?]:124
Average number of free bases in hairpin loops [?]:15.71
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:5
Maximum number of free bases in bulge loops [?]:5
Average number of free bases in bulge loops [?]:1.4
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:4
Maximum number of free bases in internal loops:3
Average number of free bases in internal loops:2.12
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:2
Average internal loop absolute asymmetry:0.75
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:1.5
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2.46
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:2.09
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:2.5
Average multi-loop relative asymmetry:0.77
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:5
Average number of branches in multi-loops:4.33
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:14
Number of base pairs in bands:116
Maximum band length:22
Average band length:8.29
Minimum band length:2
Maximum number of bands per pseudoknot:14
Average number of bands per pseudoknot:14
Minimum number of bands per pseudoknot:14
Maximum number of un-bands:4
Average number of un-bands:4
Minimum number of un-bands:4
Maximum number of in-bands:1
Average number of in-bands:1
Minimum number of in-bands:1
Maximum number of unpaired bases:85
Average number of unpaired bases:85
Minimum number of unpaired bases:85
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:26
Maximum number of base pairs to remove, per pseudoknot:26
Average number of base pairs to remove, per pseudoknot:26
Minimum number of base pairs to remove, per pseudoknot:26
Minimum number of bands to remove, per molecule:5
Maximum number of bands to remove, per pseudoknot:5
Average number of bands to remove, per pseudoknot:5
Minimum number of bands to remove, per pseudoknot:5



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