RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule CRW_00727
(click to expand/contract all tables)

Format:
Molecule ID [?]:CRW_00727
Molecule name [?]:a.I2.c.N.tabacum.A.A6.i1
Source [?]:Gutell Lab CRW Site
Source ID [?]:a.I2.c.N.tabacum.A.A6.i1
Reference [?]:http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.]
Type [?]:Group II Intron

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:780
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:6
Number of unpaired bases [?]:546
Number of paired bases [?]:234

Click on any header below for additional features.

Stem features

Number of stems [?]:24
Number of base pairs in stems [?]:117
Maximum length of a stem [?]:11
Average length of a stem [?]:4.88
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-6.67
Minimum estimated free energy [?]:-14.1

Hairpin loop features

Number of hairpin loops [?]:12
Maximum number of free bases in hairpin loops [?]:42
Average number of free bases in hairpin loops [?]:18
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:4
Maximum number of free bases in bulge loops [?]:11
Average number of free bases in bulge loops [?]:1.88
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:4
Maximum number of free bases in internal loops:21
Average number of free bases in internal loops:7
Minimum number of free bases in internal loop:3
Maximum internal loop absolute asymmetry:16
Average internal loop absolute asymmetry:6.5
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:4
Average internal loop relative asymmetry:2.25
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:4
Maximum number of free bases in multi-loops:67
Average number of free bases in multi-loops:10.93
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:55
Average multi-loop absolute asymmetry:11.77
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:7
Average multi-loop relative asymmetry:1.6
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:5
Average number of branches in multi-loops:3.5
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AC non-canonical base pairs:2

Pseudoknot features



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