RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule CRW_00728 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: CRW_00728 Molecule name [?]: a.I2.c.N.tabacum.A.L2.i1 Source [?]: Gutell Lab CRW Site Source ID [?]: a.I2.c.N.tabacum.A.L2.i1 Reference [?]: http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.] Type [?]: Group II Intron [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 739 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 6 Number of unpaired bases [?]: 501 Number of paired bases [?]: 238

Click on any header below for additional features.

Stem features Number of stems [?]: 26 Number of base pairs in stems [?]: 119 Maximum length of a stem [?]: 9 Average length of a stem [?]: 4.58 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0.7 Average estimated free energy [?]: -5.7 Minimum estimated free energy [?]: -12.4

Hairpin loop features Number of hairpin loops [?]: 12 Maximum number of free bases in hairpin loops [?]: 110 Average number of free bases in hairpin loops [?]: 16.5 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 6 Maximum number of free bases in bulge loops [?]: 39 Average number of free bases in bulge loops [?]: 4.17 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 4 Maximum number of free bases in internal loops: 10 Average number of free bases in internal loops: 2.88 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 6 Average internal loop absolute asymmetry: 1.75 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 1.25 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 4 Maximum number of free bases in multi-loops: 28 Average number of free bases in multi-loops: 9.29 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 21 Average multi-loop absolute asymmetry: 6.37 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 21 Average multi-loop relative asymmetry: 1.46 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 3.5 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AA non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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