RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule CRW_00741
(click to expand/contract all tables)

Format:
Molecule ID [?]:CRW_00741
Molecule name [?]:a.I2.c.N.tabacum.B.trnG.i1
Source [?]:Gutell Lab CRW Site
Source ID [?]:a.I2.c.N.tabacum.B.trnG.i1
Reference [?]:http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.]
Type [?]:Group II Intron

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:708
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:6
Number of unpaired bases [?]:438
Number of paired bases [?]:270

Click on any header below for additional features.

Stem features

Number of stems [?]:25
Number of base pairs in stems [?]:135
Maximum length of a stem [?]:12
Average length of a stem [?]:5.4
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-2.2
Average estimated free energy [?]:-7.38
Minimum estimated free energy [?]:-16.7

Hairpin loop features

Number of hairpin loops [?]:11
Maximum number of free bases in hairpin loops [?]:67
Average number of free bases in hairpin loops [?]:19.55
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:6
Maximum number of free bases in bulge loops [?]:58
Average number of free bases in bulge loops [?]:6.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:6
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:3.33
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:7
Average internal loop absolute asymmetry:2
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:1.5
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:16
Average number of free bases in multi-loops:7
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:14
Average multi-loop absolute asymmetry:6.8
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:8
Average multi-loop relative asymmetry:1.36
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:6
Average number of branches in multi-loops:4.5
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AG non-canonical base pairs:2

Pseudoknot features



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