RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00002
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00002
Molecule name [?]:NDB id adh013
Source [?]:Nucleic Acid Database
Source ID [?]:adh013
Reference [?]:A.H.-J.WANG, S.FUJII, J.H.VAN BOOM, A.RICH. MOLECULAR STRUCTURE OF THE OCTAMER D(G-G-C-C-G-G-C-C) MODIFIED A-DNA. PROC.NAT.ACAD.SCI.USA V. 79 3968 1982 ASTM PNASA6 US ISSN 0027-8424 0040
Type [?]:Unknown

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-Ray; ran through RNAview
Number of molecules [?]:2
Length [?]:16
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00008
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-22.4
Average estimated free energy [?]:-22.4
Minimum estimated free energy [?]:-22.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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