RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00006
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Format:
Molecule ID [?]:NDB_00006
Molecule name [?]:THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATUR
Source [?]:Nucleic Acid Database
Source ID [?]:adh031
Reference [?]:M.EISENSTEIN,F.FROLOW,Z.SHAKKED,D.RABINOVICH. THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE. NUCLEIC ACIDS RES. V. 18 3185 1990 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:16
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00005
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-18.9
Average estimated free energy [?]:-18.9
Minimum estimated free energy [?]:-18.9

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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