RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00012
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00012
Molecule name [?]:NDB id arb005
Source [?]:Nucleic Acid Database
Source ID [?]:arb005
Reference [?]:A.Aggarwal, S.A.Islam, R.Kuroda, M.R.Sanderson, S.Neidle, H.M.Berman. The Structure of the Ribodinucleoside Monophosphate Guanylyl-3',5'-Cytidine as Its Ammonium Octahydrate Salt. Acta Crystallogr.,Sect.B V. 39 98 1983 ASTM ASBSDK DK ISSN 0108-7681 622
Type [?]:Unknown

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-Ray; ran through RNAview
Number of molecules [?]:2
Length [?]:4
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00011
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:4

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:2
Maximum length of a stem [?]:2
Average length of a stem [?]:2
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-3.4
Average estimated free energy [?]:-3.4
Minimum estimated free energy [?]:-3.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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