RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00028
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00028
Molecule name [?]:NDB id ddf032
Source [?]:Nucleic Acid Database
Source ID [?]:ddf032
Reference [?]:C.M.NUNN, L.VAN MEERVELT, S.ZHANG, M.H.MOORE, O.KENNARD. DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGTACA) AND D(TGATCA) COMPLEXED WITH DAUNOMYCIN. J.MOL.BIOL. V. 222 167 1991 ASTM JMOBAK UK ISSN 0022-2836 0070
Type [?]:Unknown

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-Ray; ran through RNAview
Number of molecules [?]:2
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-10.1
Average estimated free energy [?]:-10.1
Minimum estimated free energy [?]:-10.1

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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