RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00035
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Format:
Molecule ID [?]:NDB_00035
Molecule name [?]:VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. VII. STRUCTURE OF AN ETHIDIUM
Source [?]:Nucleic Acid Database
Source ID [?]:drb018
Reference [?]:S.C.JAIN,H.M.SOBELL. VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. VII. STRUCTURE OF AN ETHIDIUM DINUCLEOSIDE MONOPHOSPHATE CRYSTALLINE COMPLEX, ETHIDIUM: URIDYLYL (3'-5')ADENOSINE. J.BIOMOL.STRUCT.DYN. V. 1 1161 1984 ASTM JBSDD6 US ISSN 0739-1102
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.1 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:4
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00045
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:4

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:2
Maximum length of a stem [?]:2
Average length of a stem [?]:2
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-1.3
Average estimated free energy [?]:-1.3
Minimum estimated free energy [?]:-1.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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