RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00037
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00037
Molecule name [?]:VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: IV. STRUCTURE OF AN AMINOACRID
Source [?]:Nucleic Acid Database
Source ID [?]:drbb09
Reference [?]:T.D.SAKORE,B.S.REDDY,H.M.SOBELL. VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: IV. STRUCTURE OF AN AMINOACRIDINE-DINUCLEOSIDE MONOPHOSPHATE CRYSTALLINE COMPLEX, 9-AMINOACRIDINE-5-IODOCYTIDYLYL(3'-5') GUANOSINE. J.MOL.BIOL. V. 135 763 1979 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:4
Length [?]:8
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00025, NDB_00069
Number of domains [?]:2
Number of unpaired bases [?]:0
Number of paired bases [?]:8

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:4
Maximum length of a stem [?]:2
Average length of a stem [?]:2
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.4
Average estimated free energy [?]:-2.4
Minimum estimated free energy [?]:-2.4

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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