RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00040
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00040
Molecule name [?]:REPORTER MOLECULES AS PROBES OF DNA CONFORMATION: STRUCTURE OF A CRYSTALLINE COMPLEX CONTAINING 2-ME
Source [?]:Nucleic Acid Database
Source ID [?]:drbb13
Reference [?]:N.K.VYAS,M.N.VYAS,S.C.JAIN,H.M.SOBELL. REPORTER MOLECULES AS PROBES OF DNA CONFORMATION: STRUCTURE OF A CRYSTALLINE COMPLEX CONTAINING 2-METHYL-4-NITROANILINE ETHYLENE DIMETHYLAMMONIUM HYDROBROMIDE-5-IODOCYTIDYLYL(3'-5')GUANOSINE. BIOCHEM.BIOPHYS.RES.COMM. V. 121 188 1984 ASTM BBRCA9 US ISSN 0006-291X
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.14 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:4
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00013, NDB_00019, NDB_00020, NDB_00023, NDB_00024, NDB_00032, NDB_00033, NDB_00034, NDB_00036, NDB_00038, NDB_00039, NDB_00041, NDB_00042, NDB_00043, NDB_00044, NDB_00068
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:4

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:2
Maximum length of a stem [?]:2
Average length of a stem [?]:2
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.4
Average estimated free energy [?]:-2.4
Minimum estimated free energy [?]:-2.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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