RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00042 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: NDB_00042 Molecule name [?]: VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. IX. STRUCTURES OF TWO N,N-DIME Source [?]: Nucleic Acid Database Source ID [?]: drbb15 Reference [?]: K.K.BHANDARY,T.D.SAKORE,H.M.SOBELL,D.KING, E.J.GABBAY. VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. IX. STRUCTURES OF TWO N,N-DIMETHYLPROFLAVINE: 5-IODOCYTIDYLYL(3'-5')GUANOSINE CRYSTALLINE COMPLEXES. J.BIOMOL.STRUCT.DYN. V. 1 1195 1984 ASTM JBSDD6 US ISSN 0739-1102 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.09 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 4 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: NDB_00013, NDB_00019, NDB_00020, NDB_00023, NDB_00024, NDB_00032, NDB_00033, NDB_00034, NDB_00036, NDB_00038, NDB_00039, NDB_00040, NDB_00041, NDB_00043, NDB_00044, NDB_00068 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 4

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 2 Maximum length of a stem [?]: 2 Average length of a stem [?]: 2 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.4 Average estimated free energy [?]: -2.4 Minimum estimated free energy [?]: -2.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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