RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00043 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: NDB_00043 Molecule name [?]: VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: V. STRUCTURE OF TWO AMINOACRID Source [?]: Nucleic Acid Database Source ID [?]: drbb16 Reference [?]: B.S.REDDY,T.P.SESHADRI,T.D.SAKORE,H.M.SOBELL. VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: V. STRUCTURE OF TWO AMINOACRIDINE-DINUCLEOSIDE MONOPHOSPHATE CRYSTALLINE COMPLEXES, PROFLAVINE-5-IODOCYTIDYLYL (3'-5') GUANOSINE AND ACRIDINE ORANGE-5-IODOCYTIDYLYL (3'-5') GUANOSINE. J.MOL.BIOL. V. 135 787 1979 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.30 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 4 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: NDB_00013, NDB_00019, NDB_00020, NDB_00023, NDB_00024, NDB_00032, NDB_00033, NDB_00034, NDB_00036, NDB_00038, NDB_00039, NDB_00040, NDB_00041, NDB_00042, NDB_00044, NDB_00068 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 4

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 2 Maximum length of a stem [?]: 2 Average length of a stem [?]: 2 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.4 Average estimated free energy [?]: -2.4 Minimum estimated free energy [?]: -2.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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