RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00070
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00070
Molecule name [?]:GT WOBBLE BASE-PAIRING IN Z-DNA AT 1.0 ANGSTROM ATOMIC RESOLUTION: THE CRYSTAL STRUCTURE OF D(CGCGTG
Source [?]:Nucleic Acid Database
Source ID [?]:zdf013
Reference [?]:P.S.HO,C.A.FREDERICK,G.J.QUIGLEY,G.A.VAN DER MAREL, J.H.VAN BOOM,A.H.-J.WANG,A.RICH. GT WOBBLE BASE-PAIRING IN Z-DNA AT 1.0 ANGSTROM ATOMIC RESOLUTION: THE CRYSTAL STRUCTURE OF D(CGCGTG). EMBO J. V. 4 3617 1985 ASTM EMJODG UK ISSN 0261-4189
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION RANGE HIGH (ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-10.2
Average estimated free energy [?]:-10.2
Minimum estimated free energy [?]:-10.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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