RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00074
(click to expand/contract all tables)

Format:

Molecule ID [?]:	NDB_00074
Molecule name [?]:	CRYSTAL STRUCTURE OF A Z-DNA FRAGMENT CONTAINING THYMINE/2- AMINOADENINE BASE PAIRS
Source [?]:	Nucleic Acid Database
Source ID [?]:	zdfb11
Reference [?]:	M.COLL,A.H.-J.WANG,G.A.VAN DER MAREL,J.H.VAN BOOM, A.RICH. CRYSTAL STRUCTURE OF A Z-DNA FRAGMENT CONTAINING THYMINE/2-AMINOADENINE BASE PAIRS. J.BIOMOL.STRUCT.DYN. V. 4 157 1986 ASTM JBSDD6 US ISSN 0739-1102
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	12
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-11
Average estimated free energy [?]:	-11
Minimum estimated free energy [?]:	-11

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features