RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00001 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00001 Molecule name [?]: CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BAS Source [?]: RCSB Protein Data Bank Source ID [?]: 157D Reference [?]: G.A.LEONARD,K.E.MCAULEY-HECHT,S.EBEL,D.M.LOUGH, T.BROWN,W.N.HUNTER. CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE PAIRS.. STRUCTURE V. 2 483 1994 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 24 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 24

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 12 Maximum length of a stem [?]: 12 Average length of a stem [?]: 12 Minimum length of a stem [?]: 12 Maximum estimated free energy [?]: -14.5 Average estimated free energy [?]: -14.5 Minimum estimated free energy [?]: -14.5

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia