RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00004 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00004 Molecule name [?]: LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES Source [?]: RCSB Protein Data Bank Source ID [?]: 1A51 Reference [?]: A.DALLAS,P.B.MOORE. THE LOOP E-LOOP D REGION OF ESCHERICHIA COLI 5S RRNA: THE SOLUTION STRUCTURE REVEALS AN UNUSUAL LOOP THAT MAY BE IMPORTANT FOR BINDING RIBOSOMAL PROTEINS.. STRUCTURE V. 5 1639 1997 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: E. COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 41 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00288 Number of domains [?]: 1 Number of unpaired bases [?]: 3 Number of paired bases [?]: 38

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 19 Maximum length of a stem [?]: 19 Average length of a stem [?]: 19 Minimum length of a stem [?]: 19 Maximum estimated free energy [?]: -27 Average estimated free energy [?]: -27 Minimum estimated free energy [?]: -27

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 3 Average number of free bases in hairpin loops [?]: 3 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AG non-canonical base pairs: 3 Total number of GG non-canonical base pairs: 1

Pseudoknot features

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