RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00006
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00006
Molecule name [?]:	SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1A9L
Reference [?]:	J.L.DIENER,P.B.MOORE. SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF.. MOL.CELL V. 1 883 1998 ASTM MOCEFL US ISSN 1097-2765
Type [?]:	Other RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	38
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00745, PDB_00240
Number of domains [?]:	1
Number of unpaired bases [?]:	10
Number of paired bases [?]:	28

Click on any header below for additional features.

Stem features

Number of stems [?]:	3
Number of base pairs in stems [?]:	14
Maximum length of a stem [?]:	6
Average length of a stem [?]:	4.67
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-7.8
Average estimated free energy [?]:	-9.67
Minimum estimated free energy [?]:	-13.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	2
Maximum number of free bases in bulge loops [?]:	3
Average number of free bases in bulge loops [?]:	1.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features