RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00007 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00007 Molecule name [?]: UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES Source [?]: RCSB Protein Data Bank Source ID [?]: 1AFX Reference [?]: S.E.BUTCHER,F.H.ALLAIN,J.FEIGON. SOLUTION STRUCTURE OF THE LOOP B DOMAIN FROM THE HAIRPIN RIBOZYME.. NAT.STRUCT.BIOL. V. 6 212 1999 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 12 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 8

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 4 Maximum length of a stem [?]: 4 Average length of a stem [?]: 4 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.6 Average estimated free energy [?]: -7.6 Minimum estimated free energy [?]: -7.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia