RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00009
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00009
Molecule name [?]:FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON
Source [?]:RCSB Protein Data Bank
Source ID [?]:1AJL
Reference [?]:K.J.LUEBKE,S.M.LANDRY,I.TINOCO. SOLUTION CONFORMATION OF A FIVE-NUCLEOTIDE RNA BULGE LOOP FROM A GROUP I INTRON.. BIOCHEMISTRY V. 36 10246 1997. UNIVERSITY OF CALIFORNIA, BERKELEY (THESIS). ASTM BICHAW US ISSN 0006-2960
Type [?]:Group I Intron

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:19
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00297
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:4
Average length of a stem [?]:3.5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-5.5
Average estimated free energy [?]:-6.25
Minimum estimated free energy [?]:-7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:5
Average number of free bases in bulge loops [?]:2.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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