RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00010
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00010
Molecule name [?]:HIV-2 TAR-ARGININAMIDE COMPLEX, NMR, 20 STRUCTURES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1AJU
Reference [?]:A.S.BRODSKY,J.R.WILLIAMSON. SOLUTION STRUCTURE OF THE HIV-2 TAR-ARGININAMIDE COMPLEX.. J.MOL.BIOL. V. 267 624 1997 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:30
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00299
Number of domains [?]:1
Number of unpaired bases [?]:8
Number of paired bases [?]:22

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:11
Maximum length of a stem [?]:7
Average length of a stem [?]:5.5
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-7.9
Average estimated free energy [?]:-12.25
Minimum estimated free energy [?]:-16.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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