RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00021
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00021
Molecule name [?]:SL3 HAIRPIN FROM THE PACKAGING SIGNAL OF HIV-1, NMR, 11 STRUCTURES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1BN0
Reference [?]:L.PAPPALARDO,D.J.KERWOOD,I.PELCZER,P.N.BORER. THREE-DIMENSIONAL FOLDING OF AN RNA HAIRPIN REQUIRED FOR PACKAGING HIV-1.. J.MOL.BIOL. V. 282 801 1998 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:20
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00285
Number of domains [?]:1
Number of unpaired bases [?]:4
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-16.8
Average estimated free energy [?]:-16.8
Minimum estimated free energy [?]:-16.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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