RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00025
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Format:
Molecule ID [?]:PDB_00025
Molecule name [?]:STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR,
Source [?]:RCSB Protein Data Bank
Source ID [?]:1BZ3
Reference [?]:P.C.DURANT,D.R.DAVIS. STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+-C BASE-PAIR AND BY PSEUDOURIDINE.. J.MOL.BIOL. V. 285 115 1999 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:17
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00024
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:7
Average length of a stem [?]:7
Minimum length of a stem [?]:7
Maximum estimated free energy [?]:-9
Average estimated free energy [?]:-9
Minimum estimated free energy [?]:-9

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AC non-canonical base pairs:1

Pseudoknot features



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